| Date | Subject | Code |
|---|---|---|
| 1-10 | Introduction | [lead] |
| 1-15 | Binomial data | [R] |
| 1-17 | BUGS: Language, engines, and interfaces | [premature] [mixture] |
| 1-22 | One-parameter models | [R] |
| 1-24 | The normal distribution | [R] [bad] |
| 1-31 | A Case Study: Two-sample categorical data | [GREAT] [OR vs. RR] |
| 2-7 | Linear regression | [R] [alcohol] |
| 2-12 | Regression analysis: Extensions | [hills] [puromycin] [beetles] [roots] |
| 2-14 | Frequentist properties of Bayesian methods | [simulation] |
| 2-19 | Model comparison: Deviance-based approaches | [alcohol] |
| 2-21 | Bayes factors and multi-model inference | [brunner.txt] [brunner.R] |
| 2-28 | MCMC Methods: Gibbs and Metropolis | [R] [US arrests] |
| 3-5 | MCMC Diagnostics | [swiss] |
| 3-19 | Introduction to hierarchical models: Varying intercepts | [radon] |
| 3-21 | Group-level predictors | [radon] |
| 3-26 | Varying intercepts and slopes | [Varying slopes] [With group-level predictor] [Correlated parameters] |
| 3-28 | Wishart Priors | [R] [Wishart] [Scaled Wishart] |
| 4-2 | Non-nested models and generalized linear models | [Flight-ANOVA] [Flight-logistic] [Earnings] |
| 4-4 | Uncertainty vs. variability, finite- vs. super-populations | [Radon][Flight] [Earnings] |
| 4-11 | Enoxaparin case study (available via e-mail to enrolled students) | |
| 4-18 | Summarizing explained variance and partial pooling | [radon] |
| 4-23 | Missing data | [CD4, ignorable] [CD4, informative] [THM, ignorable] [THM, probit] |
Some miscellaneous R functions: fun.R